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Open Source Software - jgap  jgap

JGAP is a genetic algorithms package written in Java. It is designed to require minimum effort to use out of the box , but is also designed to be hig...

Open Source Software - avianfs  avianfs

Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medic...

Open Source Software - strbio  strbio

Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary str...

Open Source Software - hysss  hysss

Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of spe...

Open Source Software - sbgn  sbgn

A Visual Notation for Systems Biology Network Diagrams

Open Source Software - vcell  vcell

Open Source home for the Virtual Cell platform (VCell) - core modules, plug-ins, and tools. See http://vcell.org/ for details of current version (free...

Open Source Software - sparkyscripts  sparkyscripts

A repository of Python extension scripts for use with the Sparky (http://www.cgl.ucsf.edu/home/sparky/) NMR assignment package. No packaged releases y...

Open Source Software - camaro  camaro

Camaro manages cDNA and RNAi screens and their resulting datasets, detects and visualizes common artifacts, and analyzes the data in the context of a...

Open Source Software - prequips  prequips

A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.