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Pysces is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time c...
GenoViz provides software applications and re-usable components for genomics data visualization. One included project is IGB: the Integrated Genome Br...
Cellontro models and simulates cells, other biological entities, and biochemical networks. Specify your models using XML and Java, or SBML.
Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medic...
Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of spe...
ROC.KIT is an application for health sciences that automatically calculates ROC curves (receiver operating charateristic plots) from continuous medica...
A platform for the integration of deterministic and stochastic models, for the simulation of the integrated models and for interactive exploration of ...
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such...
satDNA Analyzer is a tool devoted to the classification of Strachan Transition States in samples of satellite DNA. It performs several computations, i...
This is a lightweight database system to support bioinformatics data mining. See BMC Bioinformatics. 2005 Mar 24; 6(1): 72 for the first publication...