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Open Source Software - pysces  pysces

Pysces is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time c...

Open Source Software - genoviz  genoviz

GenoViz provides software applications and re-usable components for genomics data visualization. One included project is IGB: the Integrated Genome Br...

Open Source Software - cellontro  cellontro

Cellontro models and simulates cells, other biological entities, and biochemical networks. Specify your models using XML and Java, or SBML.

Open Source Software - avianfs  avianfs

Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medic...

Open Source Software - hysss  hysss

Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of spe...

Open Source Software - roc-kit  roc-kit

ROC.KIT is an application for health sciences that automatically calculates ROC curves (receiver operating charateristic plots) from continuous medica...

Open Source Software - explorator  explorator

A platform for the integration of deterministic and stochastic models, for the simulation of the integrated models and for interactive exploration of ...

Open Source Software - neobio  neobio

NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such...

Open Source Software - satdna  satdna

satDNA Analyzer is a tool devoted to the classification of Strachan Transition States in samples of satellite DNA. It performs several computations, i...

Open Source Software - genekeydb  genekeydb

This is a lightweight database system to support bioinformatics data mining. See BMC Bioinformatics. 2005 Mar 24; 6(1): 72 for the first publication...

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