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The Chemistry Development Kit (CDK) is a Java library for bio- and chemoInformatics and computational chemistry. It is the basis of other projects lik...

A collaborative workflow interface and enactor for bioinformatics

A forward-time population genetics simulation environment

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic intera...

Pysces is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time c...

SoundRuler is a tool for acoustic analysis, graphing and teaching. It interactively recognizes and measures 35 temporal and spectral properties of eac...

Lush is an object-oriented Lisp interpreter/compiler with a seamless interface to C, a huge numerical library, a GUI toolkit, and bindings to GSL, S...

Biogenesis simulates the processes involved in the evolution of unicellular organisms. It tries to be a didactic approximation to the ideas of mutatio...

GenoViz provides software applications and re-usable components for genomics data visualization. One included project is IGB: the Integrated Genome Br...

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion ...