OStatic

The Chemistry Development Kit (CDK) is a Java library for bio- and chemoInformatics and computational chemistry. It is the basis of other projects lik...

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic intera...

Pysces is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time c...

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion ...

CueMol - Molecular Visualization Framework

ProtoMol is an object-oriented component based framework for molecular dynamics simulations.

RasTop is a molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules based on the popular Rasmol soft...

JChemPaint is a Java program for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development...

Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of spe...

MesoRD is a stochastic and deterministic simulator of coupled chemical reactions and diffusions in space.