OStatic

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic intera...

This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and h...

A Python package for studying network structure, dynamics, and function.

KlustaKwik is an open-source C++ program for automatic clustering of continuous data into a mixture of Gaussians. The program was originally develo...

This project is a portal to freely available CellML related software and development of such software.

NeuroBox is an .NET OOP Library to generate, propagate and train complex neuronal networks with technologies like backpropagation with weight decay, m...

gfit creates interface between biological models and experimental data and provides tools for their analysis

Yawn: Yet Another W* Network: a java framework for developing, training and testing neural networks independently of the model and test environment.

Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of spe...

A Perl Extension for modeling enzymatic (biochemical) reaction networks