OStatic

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic intera...

KlustaKwik is an open-source C++ program for automatic clustering of continuous data into a mixture of Gaussians. The program was originally develo...

NeuroBox is an .NET OOP Library to generate, propagate and train complex neuronal networks with technologies like backpropagation with weight decay, m...

Yawn: Yet Another W* Network: a java framework for developing, training and testing neural networks independently of the model and test environment.

Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of spe...

A Perl Extension for modeling enzymatic (biochemical) reaction networks

Java/XML toolkit for research using Bayesian networks and other graphical models of probability (exact and approximate inference, structure learning, ...

Bayesian Network tools in Java (BNJ) is an open-source suite of software tools for research and development using graphical models of probability. It ...

MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & captur...

NSB entropy and mutual information estimator; applications to the analysis of neural code.