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simupop

A forward-time population genetics simulation environment

apbs

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic intera...

jgap

JGAP is a genetic algorithms package written in Java. It is designed to require minimum effort to use out of the box , but is also designed to be hig...

neurospaces

Neurospaces is a data container for complex neuronal models. It is an abstraction layer on top of a simulator, deals with end-user concepts instead of...

biogenesis

Biogenesis simulates the processes involved in the evolution of unicellular organisms. It tries to be a didactic approximation to the ideas of mutatio...

esra

Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.

nemo2

Individual-based, genetically explicit, and stochastic simulation software designed for the study of the evolution of life history traits and populati...

moose-g3

Moose-G3 is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions ...

pydstool

This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and h...

genesis-sim

GENESIS (GEneral NEural SImulation System) is a software platform for the simulation of neural systems ranging from subcellular components and biochem...

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