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Open Source Software - simupop  simupop

A forward-time population genetics simulation environment

Open Source Software - neurospaces  neurospaces

Neurospaces is a data container for complex neuronal models. It is an abstraction layer on top of a simulator, deals with end-user concepts instead of...

Open Source Software - hysss  hysss

Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of spe...

Open Source Software - runsbml  runsbml

runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different tim...

Open Source Software - four-dices  four-dices

4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in ...