OStatic

Neurospaces is a data container for complex neuronal models. It is an abstraction layer on top of a simulator, deals with end-user concepts instead of...

This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and h...

Cell Electrophysiology Simulation Environment (CESE)

MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & captur...

Our goal is to create an open source framework and toolset for modeling dynamic cellular network functions, and to develop a user community committed ...

Tissue Simulation Toolkit is a two-dimensional library for the Cellular Potts Model (Graner and Glazier 1992; Phys. Rev. Lett. 69, 2013), which is inc...

runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different tim...