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Open Source Software - simupop  simupop

A forward-time population genetics simulation environment

Open Source Software - apbs  apbs

APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic intera...

Open Source Software - jgap  jgap

JGAP is a genetic algorithms package written in Java. It is designed to require minimum effort to use out of the box , but is also designed to be hig...

Open Source Software - neurospaces  neurospaces

Neurospaces is a data container for complex neuronal models. It is an abstraction layer on top of a simulator, deals with end-user concepts instead of...

Open Source Software - biogenesis  biogenesis

Biogenesis simulates the processes involved in the evolution of unicellular organisms. It tries to be a didactic approximation to the ideas of mutatio...

Open Source Software - esra  esra

Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.

Open Source Software - nemo2  nemo2

Individual-based, genetically explicit, and stochastic simulation software designed for the study of the evolution of life history traits and populati...

Open Source Software - moose-g3  moose-g3

Moose-G3 is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions ...

Open Source Software - pydstool  pydstool

This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and h...

Open Source Software - genesis-sim  genesis-sim

GENESIS (GEneral NEural SImulation System) is a software platform for the simulation of neural systems ranging from subcellular components and biochem...

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